Publications
IRHS
IRHS
BioInformatics for plant DEFense Investigations
Publications

Publications

2024

  • Guillou MC, Gaucher M, Vergne E, Renou JP, Brisset MN, Aubourg S (2024) Phytocytokine genes newly discovered in Malus domestica and their regulation in response to Erwinia amylovora and acibenzolar‐S‐meth The Plant Genome e20540 DOI: 10.1002/tpg2.20540
     
  • Réthoré E, Pelletier S, Balliau T, Zivy M, Avelange-Macherel MH, Macherel D. (2024) Multi-scale analysis of heat stress acclimation in Arabidopsis seedlings highlights the primordial contribution of energy-transducing organelles.  Plant J. 119(1):300-331 doi: 10.1111/tpj.16763.
     
  • Tran Van Canh L, Aubourg S  (2024) Bioinformatics methods for prediction of gene families encoding extracellular peptides. Methods in Molecular Biology 2731:3-21. doi: 10.1007/978-1-0716-3511-7_1

2023

  • Lallemand T, Leduc M, Desmazières A, Aubourg S, Rizzon C, Landes C, Celton J-M (2023) Insights into the evolution of ohnologous sequences and their epigenetic marks post WGD in Malus domestica.  Genome Biology and Evolution 15(10):evad178. DOI: 10.1093/gbe/evad178 
     
  • Yang H, Kim X, Skłenar J, Aubourg S, Sancho-Andrés G, Stahl E, Guillou M-C, Gigli-Bisceglia N, Tran Van Canh L, Bender KW, Stintzi A, Reymond P, Sánchez-Rodríguez C, Testerink C, Renou J-P, Menke FLH, Schaller A, Rhodes J, Zipfel C  (2023) Subtilase-mediated biogenesis of the expanded family of Serine riCh endOgenOus Peptides.  Nature Plants 9(12):2085-2094. DOI: 10.1038/s41477-023-01583-x 
     
  • Gaudin C, Gihaut C, Briand M, Marques AS, Ferreira MA, Jacques M-A, Chen NWG (2023) Whole Genome Sequences of Nine Xanthomonas Strains Responsible for Common Bacterial Blight of Bean. Microbiology Resource Announcements Vol. 12, No. 3 DOI: 10.1128/mra.01259-22
     
  • Garin T, Brin C, Préveaux A, Brault A, Briand M, Simonin M, [...] Sarniguet A  (2023) The Type VI secretion system of Stenotrophomonas rhizophila CFBP13503 limits the transmission of Xanthomonas campestris pv. campestris 8004 from radish seeds to seedlings Molecular Plant Pathology Vol 25, Issue1 DOI: 10.1111/mpp.13412
     
  • Cesbron S, Briand M, Dittmer J, Bousset-Vaslin L, Jacques M-A, Sarniguet A (2023) First report of Xanthomonas campestris pv. campestris causing black rot on oilseed rape (Brassica napus L.) in France. Plant Disease Nov 30 DOI: 10.1094/PDIS-11-23-2326-PDN
     
  • Koutouan CE, Le Clerc V, Suel A, Hamama L, Claudel P, Halter D, Baltenweck R, Hugueney P, Chich JF, Moussa SA, Champlain C, Huet S, Voisine L, Pelletier S, Balzergue S, Chevalier W, Geoffriau E, Briard M. (2023) Co-Localization of Resistance and Metabolic Quantitative Trait Loci on Carrot Genome Reveals Fungitoxic Terpenes and Related Candidate Genes Associated with the Resistance to Alternaria dauci.  Metabolites 2;13(1) doi: 10.3390/metabo13010071.
     
  • Ley-Ngardigal B, Pelletier S, Guérin V, Huché-Thélier L, Brouard N, Roman H, Leduc N. (2023) Unraveling the dataset transcriptomic response of Hydrangea macrophylla stem to mechanical stimulation: De novo assembly and functional annotation.  Data Brief. 51:109784 doi: 10.1016/j.dib.2023.109784. 

2022

  • Osdaghi E,  Taghouti G, Dutrieux C, Taghavi SM,  Fazliarab A, Briand M, Fischer-Le Saux M, Portier P, Jacques M-A (2022) Whole Genome Resources of 17 Curtobacterium flaccumfaciens Strains Including Pathotypes of C. flaccumfaciens pv. betae, C. flaccumfaciens pv. oortii and C. flaccumfaciens pv. poinsettiae Molecular Plant-Microbe Interactions 35 (4), 352-356 doi:10.1094/mpmi-11-21-0282-a
     
  • Stahl E, Fernandez Martin A, Glauser G, Guillou M-C, Aubourg S, Renou J-P, Reymond P  (2022) The MIK2/SCOOP signaling system contributes to Arabidopsis resistance against herbivory by modulating jasmonate and indole glusosinolate biosynthesis. Frontiers in Plant Science 13:852808 doi: 10.3389/fpls.2022.852808
     
  • Gaucher M, Righetti L, Aubourg S, Dugé de Bernonville T, Brisset M-N, Chevreau E, Vergne E (2022) An Erwinia amylovora inducible promoter for improvement of apple fire blight resistance Plant Cell Reports 41(8):1789 doi: 10.1007/s00299-022-02869-
     
  • Guillou M-C, Vergne E, Aligon S, Pelletier S, Simonneau F, Roland A, Chabout S, Mouille G, Gully K, Grappin P, Montrichard F, Aubourg S, Renou J-P (2022) The peptide SCOOP12 acts on reactive oxygen species homeostasis to modulate cell division and elongation in Arabidopsis primary root. Journal of Experimental Botany 73(18):6115-6132 doi: 10.1093/jxb/erac240
     
  • Guillou M-C, Balliau T, Vergne E, Canut H, Chourré J, Herrera-León C, Ramos-Martín F, Ahmadi-Afzadi M, D'Amelio N, Ruelland E, Zivy M, Renou J-P, Jamet E, Aubourg S (2022) The PROSCOOP10 gene encodes two extracellular hydroxylated peptides and impacts flowering time in Arabidopsis. Plants 11(24):3554 doi: 10.3390/plants11243554
     
  • Zang L, Tarkowski LP,Morère-Le Paven MC, Zivy M, Balliau T, Clochard T, Bahut M, Balzrgue S, Pelletier S, Landès C, Limami 1, Montrichard F (2022) The Nitrate Transporter MtNPF6.8 is a master sensor of nitrate signal in the primary root tip of Medicago truncatula Frontiers in Plant Science 13:832246 doi: 10.3389/fpls.2022.832246
     
  • Eid R, Landès C, Pernet A, Benoît E, Santagostini P, El Ghaziri A, Bourbeillon J (2022) DIVIS: a semantic distance to improve the VISualisation of heterogeneous phenotypic datasets BioData Mining 15:10 doi: 10.1186/s13040-022-00293-y 
     
  • Foucher J, Ruh M, Briand M, Préveaux A, Barbazange F, Boureau T, Jacques M-A, Chen NWG (2022) Improving common bacterial blight phenotyping by using rub-inoculation and machine learning: cheaper, better, faster, stronger Phytopathology 112:691-699  doi:10.1094/PHYTO-04-21-0129-R
     
  • Simonin M, Briand M, Chesneau G, Rochefort A, Marais C, Sarniguet A, Barret M (2022) Seed microbiota revealed by a large-scale meta-analysis including 50 plant species. New Phytologist 234(4):1448-1463 doi: 10.1111/nph.18037
     
  • Portier P, Taghouti G, Bertrand P.E, Briand M, Dutrieux C, Lathus A, Fischer-Le Saux M (2022) Analysis of the Diversity of Xylophilus ampelinus Strains Held in CIRM-CFBP Reveals a Strongly Homogenous Species Microorganisms Vol. 10 Issue 8 Pages 1531 DOI: 10.3390/microorganisms10081531
     
  • Chesneau G, Laroche B, Préveaux A, Marais C, Briand M, Marolleau B, Simonin M, Barret M (2022) Single Seed Microbiota: Assembly and Transmission from Parent Plant to Seedling mBio 13(6):e0164822 DOI: 10.1128/mbio.01648-22
     
  • Ortega-Cuadros M, De Souza TL, Berruyer R, Aligon S, Pelletier S, Renou JP, Arias T, Campion C, Guillemette T, Verdier J, Grappin P. (2022) Seed Transmission of Pathogens: Non-Canonical Immune Response in Arabidopsis Germinating Seeds Compared to Early Seedlings against the Necrotrophic Fungus Alternaria brassicicola.  Plants (Basel) 28;11(13). doi: 10.3390/plants11131708

2021

  • N'Guyen GQ, Raulo R, Porquier A, Iacomi B, Pelletier S, Renou JP, Bataillé-Simoneau N, Campion C, Hamon B, Kwasiborski A, Colou J, Benamar A, Hudhomme P, Macherel D, Simoneau P, Guillemette T. (2021) Responses of the Necrotrophic Fungus Alternaria brassisicola to the Indolic Phytoalexin Brassinin. Front Plant Sci. 11:611643 doi:10.3389/fpls.2020.611643
     
  • Briand M, Ruh M, Darrasse A, Jacques MA, Chen NWG (2021) Complete and Circularized Genome Sequences of 17 Xanthomonas Strains Responsible for Common Bacterial Blight of Bean Aliment Pharmacol Ther 10:31 doi:10.1128/MRA.00371-21
     
  • Canivet CM, David N, Pailhoriès H, Briand M, Guy CD, Bouchez O, Hunault G, Fizanne L, Lannes A, Oberti F,  Fouchard I, Calès P, Diehl AM, Barret M, Boursier J (2021) Cross-linkage between bacterial taxonomy and gene functions: a study of metagenome-assembled genomes of Gut Microbiota in adult non-alcoholic fatty liver disease Aliment Pharmacol Ther 53(6):722-732.  doi:10.1111/apt.16262
     
  • Chen NWG, Ruh M, Darrasse A, Foucher J, Briand M, Costa J, Studholme DJ, Jacques M-A (2021) Common bacterial blight of bean: a model of seed transmission and pathological convergence Molecular Plant Pathology  00:1–17 doi:10.1111/mpp.13067
     
  • Briand M, Ruh M, Darrasse A, Jacques M-A, Chen NWG. (2021) Complete and Circularized Genome Sequences of 17 Xanthomonas Strains Responsible for Common Bacterial Blight of Bean Microbiology Resource Announcements 10(31) doi:10 .1128/MRA.00371-21
     
  • Ruh M, Briand M, Bonneau S, Darrasse A, Jacques M-A, Chen NWG (2021) Complete and Circularized Genome Sequences of Three Xanthomonas Strains Pathogenic on Soybean and Alfalfa Microbiology Resource Announcements 10(31) doi:10 .1128/MRA.00537-21
     
  • Clavijo-Coppens F, Ginet N, Cesbron S, Briand M, Jacques M.-A, Ansaldi M (2021) Novel Virulent Bacteriophages Infecting Mediterranean Isolates of the Plant Pest Xylella fastidiosa and Xanthomonas albilineans Viruses 13:725 doi:10.3390/v13050725
     
  • Perchepied L, Chevreau E, Ravon E, Gaillard S, Pelletier S, Bahut M, Berthelot P, Cournol R, Schouten HJ, Vergne E. (2021) Successful intergeneric transfer of a major apple scab resistance gene (Rvi6) from apple to pear and precise comparison of the downstream molecular mechanisms of this resistance in both species.  BMC Genomics 22(1):843. doi: 10.1186/s12864-021-08157-1

2020

  • Marc M, Cournol M, Hanteville S, Poisson A-S, Guillou M-C, Pelletier S, Laurens F, Tessier C, Coureau C, Renou J-P, Delaire M, Orsel M (2020) Pre-harvest climate and post-harvest acclimation to cold prevent from superficial scald development in Granny Smith apples. Sci Rep 10:6180 DOI: 10.1038/s41598-020-63018-3
     
  • Perrin A, Daccord N, Roquis D, Celton J-M, Vergne E, Bucher E (2020) Divergent DNA methylation signatures of juvenile seedlings, grafts and adult apple trees. Epigenomes 4:4 DOI: 10.3390/epigenomes4010004
     
  • Lallemand T, Leduc M, Landès C, Rizzon C, Lerat E (2020) An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their Choice Genes 11: 1046. DOI: 10.3390/genes11091046
     
  • Adams K, Araújo W, Aubourg S, Baginsky S, Bakker E, Bärenfaller K, Batley J, Beale M, Beilstein M, Belkhadir Y, Mendel G, Berardini T, [...], Žárský V, Zhong X, Peer Y, Wijk K, Gillhaussen P  (2020) Current status of the multinational Arabidopsis community Plant Direct 4 (7), e00248 doi:10.1002/pld3.248
     
  • Foucher J, Ruh M, Préveaux A, Carrère S, Pelletier S, Briand M, Serre RF, Jacques MA, Chen NWG (2020) Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis BMC Genomics 21(1):566 doi:10.1186/s12864-020-06972-6

2019

  • Chambon A, Boureau T, Lardeux F, Saubion F (2019) Accelerated algorithm for computation of all patternz in logical analysis of data. Proceedings ICPRAM. 1:210-220
  • Denancé N, Briand M, Gaborieau R, Gaillard S, Jacques MA. (2019) Identification of genetic relationships and subspecies signatures in Xylella fastidiosa. BMC Genomics. 20(1), 1–21
  • Dupas E, Briand M, Jacques MA, & Cesbron, S (2019) Novel tetraplex qPCR assays for simultaneous detection and identification of Xylella fastidiosa subspecies in plant tissues. Frontiers in plant Science. in press
  • Ferreira MASV, Bonneau S, Briand M, Cesbron S, Portier P, Darrasse A, Gama MAS, Barbosa MAG, Mariano RdLR, Souza EB and Jacques MA (2019) Xanthomonas citri pv. viticola Affecting Grapevine in Brazil: Emergence of a Successful Monomorphic Pathogen. Front. Plant Sci. 10:489
  • Gully K, Celton J-M, Degrave A, Pelletier S, Brisset M-N, Bucher E (2019) Biotic stress-induced priming and de-priming of transcriptional memory in Arabidopsis and Apple. Epigenomes. 3(1), 3
  • Meline V, Delage W, Brin C, Li-Marchetti C, Sochard D, Arlat M, Rousseau C, Darrasse A, Briand M, Lebreton G, Portier P, Fischer-Le Saux M, Durand K, Jacques M-A, Belin E, Boureau T (2019) Role of the acquisition of a Type 3 Secretion System in the emergence of novel pathogenic strains of Xanthomonas. Molecular Plant Pathology. 20:33-50
  • N'Guyen GQ, Raulo R, Marchi M, Agustí-Brisach C, Iacomi B, Pelletier S, Renou JP, Bataillé-Simoneau N, Campion C, Bastide F, Hamon B, Mouchès C, Porcheron B, Lemoine R, Kwasiborski A, Simoneau P, Guillemette T. (2019) Responses to Hydric Stress in the Seed-Borne Necrotrophic Fungus Alternaria brassicicola. Frontiers in Microbiollogy. 30;10:1969
  • Pelletier S, Gully K, Guillou M-C, Ferrand M, Aligon S, Pokotylo I, Perrin A, Vergne E, Fagard M, Ruelland E, Grappin P, Bucher E, Renou J-P, Aubourg S (2019) The SCOOP12 peptide regulates defense response and root elongation in Arabidopsis thaliana. Journal of Exp Botany. 70(4)
  • Torres-Cortés G, Garcia BJ, Compant S, Rezki S, Jones P, Préveaux A, Briand M4, Roulet A5, Bouchez O5, Jacobson D2, Barret M4. (2019) Differences in resource use lead to coexistence of seed-transmitted microbial populations. Sci Rep. 9:e6648
  • Rochefort R, Briand M, Marais C, Wagner MH, Laperche A, Vallee P, Barret M, Sarniguet A (2019) Influence of Environment and Host Plant Genotype on the Structure and Diversity of the Brassica napus Seed Microbiota. Phytobiomes.

2018

  • Ahmadi-Afzadi M, Orsel M, Pelletier S, Bruneau M, Proux-Wéra E, Nybom H, Renou JP (2018) Genome-wide expression analysis suggests a role for jasmonates in the resistance to blue mold in apple. Plant Growth Regulation. 85:375-387
  • Berthelier J, Casse N, Daccord N, Jamilloux V, Saint-Jean B, Carrier G (2018) A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea. BMC Genomics. 19(1):378
  • Chen NWG, Serres-Giardi L, Ruh M, Briand M, Bonneau S, Darrasse A, Barbe V, Gagnevin L, Koebnik R, Jacques M-A (2018) Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean. BMC Genomics. 19:606
  • Dall'Agata M, Pagliarani G, Padmarasu S, Troggio M, Bianco L, Dapena E, Miñarro M, Aubourg S, Lespinasse Y, Durel C-E, Tartarini S (2018) Identification of candidate genes at the Dp-fl locus conferring resistance against the rosy apple aphid Dysaphis plantaginea. Tree Genetics & Genomes. 14:12
  • Hibrand Saint-Oyant L, Ruttink T, Hamama L, Kirov I, Lakhwani D, Zhou NN, Bourke PM, Daccord N, Leus L, Schulz D, Van de Geest H, Hesselink T, Van Laere K, Debray K, Balzergue S, Thouroude T, Chastellier A, Jeauffre J, Voisine L, Gaillard S, Borm TJA, Arens P, Voorrips RE, Maliepaard C, Neu E, Linde M, Le Paslier MC, Bérard A, Bounon R, Clotault J, Choisne N, Quesneville H, Kawamura K, Aubourg S, Sakr S, Smulders MJM, Schijlen E, Bucher E, Debener T, De Riek J, Foucher F (2018) A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits. Nature Plants. 4:473-484
  • Legeay M, Aubourg S, Renou J-P, Duval B (2018) Large scale study of anti-sense regulation by differential network analysis. BMC Systems Biology. 12:95
  • Osdaghi E, Portier P, Briand M, Taghouti G, Jacques M-A. (2018) Draft genome sequences of the type strains of three Clavibacter subspecies and atypical peachcolored strains isolated from tomato. Microbiol Resour Announc. 7:e01357-18
  • Rigaill G, Balzergue S, Brunaud V, Blondet E, Rau A, Rogier O, Caius J, Maugis-Rabusseau C, Soubigou-Taconnat L, Aubourg S, Lurin C, Martin-Magniette ML, Delannoy E (2018) Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis. Brief Bioinform. 19(1):65-76.
  • Soleti R, Hilairet G, Mallegol P, Dourguia C, Frifra M, Guillou MC, Gacel A, Guyot S, Pignon P, Basset L, Cadot Y, Renou JP, Orsel M, Andriantsitohaina R (2018) Screening of ordinary commercial varieties of apple fruits under different storage conditions for their potential vascular and matabolic protective properties. Food Funct. 9(11):5855-5867
  • Torres-Cortés G, Bonneau S, Bouchez O, Genthon C, Briand M, Jacques M-A and Barret M (2018) Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence. Front. Plant Sci. 9:902
  • Warneys R, Gaucher M, Robert P, Aligon S, Anton S, Aubourg S, Barthes N, Braud F, Cournol R, Gadenne C, Heintz C, Brisset M-N, Degrave A (2018) Acibenzolar-S-methyl reprograms apple transcriptome towards resistance to rosy apple aphid. Frontiers in Plant Science. 9:1975

2017

  • Daccord N, Celton J-M, Linsmith G, Becker C, Choisne N, Schijlen E, van de Geest H, Bianco L, Micheletti D, Velasco R, Di Pierro E, Gouzy J, Rees J, Muranty H, Durel C-E, Laurens F, Lespinasse Y, Gaillard S, Aubourg S, Quesneville H, Weigel D, van de Weg E, Troggio M, Bucher E (2017) High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development. Nature Genet. 49(7): 1099-1106.
  • Denance N, Legendre B, Briand M, Olivier V, de BoissesonC, Poliakoff F, Jacques MA. (2017) Several subspecies and sequence types are associated with the emergence of Xylella fastidiosa in natural settings in France. Plant Pathology. 66:1054–1064
  • Goyet V, Billard E, Pouvreau JB, Lechat MM, Pelletier S, Bahut M, Monteau F, Spíchal L, Delavault P, Montiel G, Simier P. (2017) Haustorium initiation in the obligate parasitic plant Phelipanche ramosa involves a host-exudated cytokinin signal. J Exp Bot. 68(20):5539-5552.
  • Lima JJP, Buitink J, Lalanne D, Rossi RF, Pelletier S, da Sivla EAA, Leprince 0 (2017) Molecular characterization of the acquisition of longevity during seed maturation in soybean. Plos One. 12(7):e0180282
  • Merda D, Briand M, Bosis E, Rousseau C, Portier P, Barret M, Jacques MA, Fischer-Le Saux M (2017) Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens. Molecular Ecology. 26:5939-5952
  • Ruh M, Briand M, Bonneau S, Jacques MA, Chen NWG. (2017) Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors. BMC Genomics . 18:670
  • Ruh M, Briand M, Bonneau S, Jacques MA, Chen NWG. (2017) First Complete Genome Sequences of Xanthomonas citri pv. vignicola Strains CFBP7111, CFBP7112, and CFBP7113 Obtained Using Long-Read Technology. Genome Announcements. 5:e00813-17
  • Storch TT, Finatto T, Bruneau M, Orsel-Baldwin M, Renou JP, Rombaldi CV, Quecini V, laurens F, Girardi CL (2017) Constrasting transcriptionnal programs control postharvest development od apples (Malus x domestica Borkh.) submitted to cold storage and ethylene blockage. J Agric. Food Chem. 65(35):7813-7826
  • Thieme M, Lanciano S, Balzergue S, Daccord N, Mirouze M, Bucher E (2017) Inhibition of RNA polymerase II allows controlled mobilization of retrotransposons for plant breeding. Genome Biol. 18(1):134
  • Urrestarazu J, Muranty H, Denancé C, Leforestier D, Ravon E, Guyader A, Guisnel R, Feugey L, Aubourg S, Celton J-M, Daccord N, Dondini L, Gregori R, Lateur M, Houben P, Ordidge M, Paprstein F, Sedlak J, Nybom H, Garkava-Gustavson L, Troggio M, Bianco L, Velasco R, Poncet C, Theron A, Moriya S, Bink M, Laurens F, Tartarini S, Durel C-E (2017) Genome-wide association mapping of flowering and ripening periods in apple. Frontiers in Plant Science. 8:1923.

2016

  • Chetouhi C, Bonhomme L, Lasserre-Zuber P, Cambon F, Pelletier S, Renou JP, Langin T. 2016.  Transcriptome dynamics of a susceptible wheat upon Fusarium head blight reveals that molecular responses to Fusarium graminearum infection fit over the grain development processes. Funct Integr Genomics.Mar;16(2):183-201.
  • Cunty A, Cesbron S, Briand M, Carrère S, Poliakoff  F, Jacques MA, Manceau C (2016) Draft genome sequences of five Pseudomonas syringae  pv. actinidifoliorum strains isolated in France. Brazilian Journal of Microbiology. 47(3):529-30
  • Dheilly E, Gall SL, Guillou MC, Renou JP, Bonnin E, Orsel M, Lahaye M (2016) Cell wall dynamics during apple development and storage involves hemicellulose modifications and related expressed genes. BMC Plant Biol. 16(1):201
  • Jacques M-A, Denancé N, Legendre B, Morel E, Briand M, Mississipi S, Durand K, Olivier V, Portier P, Poliakoff F, Crouzillat D (2016) New variants of coffee-infecting Xylella fastidiosa issued from homologous recombination. Appl. Environ. Microbiol. 82:1556-1568.
  • Legeay M, Duval B, Renou J-P (2016) Inference and differential analysis of extended core networks : a way to study anti-sense regulation. IEEE International conference in Bioinformatics and Biomedecine. BIBM 15-18/12/2016
  • Legeay M, Duval B, Renou J-P (2016) Differential functional analysis and change motifs in gene networks to explore the role of Anti-sense transcription. Bioinformatics research and applications. 117-126. ISBN 978-3-319-38782-6
  • Liorzou M, Pernet A, Li S, Chastellier A, Thouroude T, Michel G, Malécot V, Gaillard S, Briée C, Foucher F, Oghina-Pavie C, Clotault J, Grapin A (2016) Nineteenth century French rosee (Rosa sp) germplasm shows a shift over time from a European to an Asian genetic background. Journal of Exp. Botany. 67(15):4711-25
  • Rezki S, Campion C, Iacomi-Vasilescu B, Préveaux A, Toualbia Y, Bonneau S, Briand M, Laurent E, Hunault G, Simoneau P, Jacques MA, Barret M (2016) Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms. PeerJ. 4:e1923
  • Zhang H, Dugé de Bernonville T, Body M, Glevarec G. Reichelt M, Unsicker S, Bruneau M, Renou J.P, Huguet E, Dubreuil G. & Giron D. (2016) Leaf-mining by Phyllonorycter blancardella reprograms the host-leaf transcriptome to modulate phytohormones associated with nutrient mobilization and plant defense. Journal of Insect Physiology. In Press

2015

  • Barret M, Briand M, Bonneau S, Préveaux A, Valière S, Bouchez O, Hunault G, Simoneau P, Jacques MA.2015. Emergence shapes the structure of the seed-microbiota. Appl. Environ. Microbiol. 81 (4) : 1257-1266
  • Cesbron C, Briand M, Essakhi S, Gironde S, Boureau T, Manceau C, Fischer-Le Saux M, Jacques MA. (2015) Comparative genomics of pathogenic and nonpathogenic strains of Xanthomonas arboricola unveil molecular and evolutionary events linked to pathoadaptation. Frontiers in Microbiology. 6:1126.
  • Chambon A, Boureau T, Lardeux F, Saubion F, Le Saux M (2015) Characterization of multiple groups of data. IEEE International conference on (ICTAI). p1021-1028
  • Porto D.D., Bruneau M., Perini P., Anzanello R., Renou J.P., Santos H.P., Fialho F.B. & Revers L.F. .2015. Transcription profiling of the chilling requirement for bud break in apples: a putative role for FLC-like genes. Journal of Experimental Botany.66(9):2659-72.
  • Righetti K, Vu JL, Pelletier S, Vu BL, Glaab E, Lalanne D, Pasha A, Patel RV, Provart NJ, Verdier J, Leprince O, Buitink J.2015. Inference of Longevity-Related Genes from a Robust Coexpression Network of Seed Maturation Identifies Regulators Linking Seed Storability to Biotic Defense-Related Pathways. Plant Cell, Sep 26. pii: tpc.15.00632.
  • Roman H., Rapicault M., Miclot A.S., Larenaudie M., Kawamura K., Thouroude T., Chastellier A., Lemarquand A., Dupuis F., Foucher F., Lousteau S., Hibrand-Saint Oyant L. 2015. Genetic analysis of the flowering date and number of petals in rose. Tree Genetics and Genomes. DOI :10.1007/s11295-015-0906-6
  • Rousseau C, Hunault G, Gaillard S, Bourbeillon J, Montiel G, Simier P, Campion C, Jacques MA, Belin E, Boureau T.2015. Phenoplant: A web resource for the exploration of large Chlorophyll Fluorescence Image datasets. Plant methods. 0.475
  • Terrasson E, Darrasse A, Righetti K, Buitink J, Lalanne D, Ly Vu B, Pelletier S, Bolingue W, Jacques M-A, Leprince O.2015. Identification of a molecular dialogue between developing seeds of Medicago truncatula and seedborne xanthomonads. Journal of Experimental Botany. 66(13):3737-52.
  • Zaag R., Tamby J.P., Guichard C., Tariq Z., Rigaill G., Delannoy E., Renou J.P., Balzergue S., Mary-Huard T., Aubourg S., Martin-Magniette M.L. & Brunaud V. 2015. GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response. Nucleic Acids Res. Jan;43(Database issue):D1010-7
  • Zhang H., Dugé de Bernonville T., Body M., Glevarec G. Reichelt M., Unsicker S., Bruneau M., Renou J.P., Huguet E., Dubreuil G. & Giron D. 2015. Leaf-mining by Phyllonorycter blancardella reprograms the host-leaf transcriptome to modulate phytohormones associated with nutrient mobilization and plant defense. Journal of Insect Physiology. 84:114-127.

2014

  • Arias MC, Pelletier S, Hilliou F, Wattebled F, Renou JP & Christophe D'Hulst C. 2014. From dusk till dawn: the Arabidopsis thaliana sugar starving responsive network. Frontiers in Plant Science. Sep 22;5:482. doi: 10.3389/fpls. 2014. 00482
  • Aznar A., Chen N., Rigault M., Thomine S., Renou J.P., Soubigou-Taconnat L., Desmaële D., Joseph D., Mouille G., Boutet S. & Dellagi A. 2014. Scavenging iron: a novel mechanism of plant immunity activation by microbial siderophores. Plant Physiology.Apr;164(4):2167-83
  • Celton JM, Dheilly E, Guillou MC, Simonneau F, Juchaux M, Costes E, Laurens F, Renou JP. 2014. Additional amphivasal bundles in pedicel pith exacerbate central fruit dominance and induce self-thinning of lateral fruitlets in apple. Plant Physiology.Apr;164(4):1930-51
  • Celton JM, Gaillard S, Bruneau M, Pelletier S, Aubourg S, Martin-Magniette ML, Navarro L, Laurens F, Renou JP. 2014. Widespread anti-sense transcription in apple is correlated with siRNA production and indicates a large potential for transcriptional and/or post-transcriptional control. New Phytolologist. Jul; 203(1):287-99
  • Doustaly F., Combes F., Fiévet J, Berthet S., Hugouvieux V., Bastien O., Aranjuelo I., Leonhardt N., Rivasseau C., Carrière M., Vavasseur A., Renou J.P., Vandenbrouck Y. & Bourguignon J. 2014. Uranium perturbs signaling and iron uptake response in Arabidopsis thaliana roots. Metallomics. Mar 26;6(4):809-21
  • Dutheil JY, Gaillard S, Stukenbrock EH. 2014. MafFilter: a highly flexible and extensible multiple genome alignment files processor. BMC Genomics. 15:53
  • Jammes F., Leonhardt N., Tran D., Bousserouel H., Véry A.A., Renou J.P., Vavasseur A., Kwak J.M., Sentenac H., Bouteau F. & Leung J. 2014. Acetylated 1,3-diaminopropane antagonizes abscisic acid-mediated stomatal closing in Arabidopsis (97). Plant Journal. May 29. doi: 10.1111/tpj.12564
  • Mikol-Segonne S., Bruneau M., Celton J.M., Le Gall S., Francin-Allami M., Juchaux M., Laurens F., Orsel M. & Renou J.P. BMC Plant Biology. 14:1593. DOI: 10.1186/s12870-014-0375-3. 2014. Multiscale investigation of mealiness in apple: an atypical role for a pectin methylesterase during fruit maturation. BMC Plant Biology. Dec 31;14:375
  • Mondy S, Lenglet A, Cosson V, Pelletier S, Pateyron S, Gilard F, Scholte M, Brocard L, Couzigou JM, Tcherkez G, Péan M, Ratet P. 2014. GOLLUM [FeFe]-hydrogenase-like proteins are essential for plant development in normoxic conditions and modulate energy metabolism. Plant Cell & Environment.37:54-69
  • Planchais S., Cabassa C., Toka I., Justin A.M., Renou JP, Savouré A. & Carol P. 2014. BASIC AMINO ACID CARRIER 2 gene expression modulates arginine and urea content and stress recovery in Arabidopsis leaves. Frontiers in Plant Science. Jul 16; 5:330.
  • Santagostini P., Demotes-Mainard S., Huché-Thélier L., Leduc N., Bertheloot J., Guérin V., Bourbeillon J., Sakr S.,Boumaza R. 2014. Assessment of the visual quality of ornamental plants: Comparison of three methodologies in the case of the rosebush. Scientia Horticulturae.168, 17-26
  • Verdu C.F., Guyot S., Childebrand N., Bahut M., Celton J.M., Gaillard S., Lasserre-Zuber P. Troggio M., Guilet D., Laurens F. 2014. QTL Analysis and Candidate Gene Mapping for the Polyphenol Content in Cider Apple. PLoS One. 9(10): e107103
  • Vergne E, Dugé de Bernonville T, Dupuis F,  Sourice S, Cournol R, Berthelot P,  Barny MA, Brisset MN, Chevreau E. 2014. Membrane targeted HrpNEa can modulate apple defense gene expression. Molecular Plant-Microbe interactions. 27: 125-135

2013

  • Chupeau M.C., Granier F., Pichon O., Renou J.P., Gaudin V. & Chupeau Y. 2013 .Characterization of the Early Events leading to Totipotency in an Arabidopsis Protoplast Liquid Culture by Temporal Transcript Profiling.Plant Cell,Jul 31. [Epub ahead of print].
  • Gueguen L, Gaillard S, Boussau B, Gouy M, Groussin M, Rochette NC, Bigot T, Fournier D, Pouyet F, Cahais V, Bernard A, Scornavacca C, Nabholz B, Haudry A, Dachary L, Galtier N, Belkhir K,Dutheil JY  2013 Bio++: efficient extensible libraries and tools for computational molecular evolution Molecular biology and evolution 30(8):1745-1750
  • Verdier J, Pelletier S, Lalanne D, Torres-Jerez I, Righetti K, Bandyopadhyay K, Leprince O, Chatelain E, Ly Vu B, Gouzy J, Gamas P, Udvardi M, and Buitink J 2013 A regulatory network-based approach dissects late maturation processes related to the acquisition of desiccation tolerance and longevity of Medicago truncatula seeds Plant Physiology pp.113.222380v1-pp.113.222380.
  • Ranocha P., Dima O., Nagy R., Felten J., Corratgé-Faillie C., Novák O., Morreel K., Lacombe B., Martinez Y., Pfrunder S., Jin X., Renou J.-P., Thibaud J.-B., Ljung K., Fischer U., Martinoia E., Boerjan W. & Goffner D. 2013 .Arabidopsis WAT1 is a vacuolar auxin transport facilitator required for auxin homeostasis.Nature Communications, 4:625

2012

  • Dutilleul C, Benhassaine-Kesri G, Demandre C, Rézé N, Launay A, Pelletier S, Renou JP, Zachowski A, Baudouin E, Guillas I. 2012 Phytosphingosine-phosphate is a signal for AtMPK6 activation and Arabidopsis response to chilling. New Phytolologist Apr;194(1):181-91.
  • Petriacq P, de Bont L, Hager J, Didierlaurent L, Mauve C, Guerard F, Noctor G, Pelletier S, Renou JP, Tcherkez G, Gakiere B. 2012 Inducible NAD overproduction in Arabidopsis alters metabolic pools and gene expression correlated with increased salicylate content and resistance to Pst-AvrRpm1. Plant Journal May;70(4):650-65.
  • Denancé N, Ranocha P, Oria N, Barlet X, Rivière MP, Yadeta KA, Hoffmann L, Perreau F, Clément G, Maia-Grondard A, van den Berg GC, Savelli B, Fournier S, Aubert Y, Pelletier S, Thomma BP, Molina A, Jouanin L, Marco Y, Goffner D. 2012 Arabidopsis wat1 (walls are thin1)-mediated resistance to the bacterial vascular pathogen, Ralstonia solanacearum, is accompanied by cross-regulation of salicylic acid and indole metabolism Plant Journal 73(2):225-39
  • Fontaine JX, Tercé-Laforgue T, Armengaud P, Clément G, Renou JP, Pelletier S, Catterou M, Azzopardi M, Gibon Y, Lea PJ, Hirel B, Dubois F. 2012 Characterization of a NADH-Dependent Glutamate Dehydrogenase Mutant of Arabidopsis Demonstrates the Key Role of this Enzyme in Root Carbon and Nitrogen Metabolism. Plant Cell 24(10):4044-65

2011

  • Schikora A, Virlogeux-Payant I, Bueso E, Garcia AV, Nilau T, Charrier A, Pelletier S, Menanteau P, Baccarini M, Velge P, Hirt H. 2011 Conservation of Salmonella infection mechanisms in plants and animals. PLoS One 6(9):e24112
  • Jay F, Wang Y, Yu A, Taconnat L, Pelletier S, Colot V, Renou JP, Voinnet O. 2011 Misregulation of AUXIN RESPONSE FACTOR 8 underlies the developmental abnormalities caused by three distinct viral silencing suppressors in Arabidopsis. PLoS Pathog. May;7(5):e1002035
  • Cheminant S, Wild M, Bouvier F, Pelletier S, Renou JP, Erhardt M, Hayes S, Terry MJ, Genschik P, Achard P. 2011 DELLAs regulate chlorophyll and carotenoid biosynthesis to prevent photooxidative damage during seedling deetiolation in Arabidopsis. Plant Cell May;23(5):1849-60.
  • Vandecasteele C, Teulat-Merah B, Morère-Le Paven MC, Leprince O, Ly Vu B, Viau L, Ledroit L, Pelletier S, Payet N, Satour P, Lebras C, Gallardo K, Huguet T, Limami AM, Prosperi JM, Buitink J. 2011 Quantitative trait loci analysis reveals a correlation between the ratio of sucrose/raffinose family oligosaccharides and seed vigour in Medicago truncatula. Plant Cell Environ. Sep;34(9):1473-87.

Modification date: 15 January 2025 | Publication date: 21 April 2011 | By: SP